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whole mouse genome microarray comparisons  (Agilent technologies)


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    Agilent technologies whole mouse genome microarray comparisons
    Whole Mouse Genome Microarray Comparisons, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+comparisons/pm21320871-199-1-0
    Average 86 stars, based on 1 article reviews
    whole mouse genome microarray comparisons - by Bioz Stars, 2026-11
    86/100 stars

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    Related Articles

    Hybridization:

    Article Title: Genetic alterations determine chemotherapy resistance in childhood T-ALL: modelling in stage-specific cell lines and correlation with diagnostic patient samples.
    Article Snippet: Treatment failure in T-cell acute lymphoblastic leukaemia (T-ALL) occurs when leukaemic blasts acquire resistance to chemotherapeutic agents (Pui et al, 2002).. T-ALL is a biologically and clinically distinct disease entity that is associated with clinically aggressive features and poor treatment outcomes (Uckun et al, 1998; Pui & Evans, 2006).. Although 95% of children and young adults currently treated for T-ALL enter into a first remission, approximately 25% of patients relapse for reasons that remain unclear (Kanerva et al, 2001; Tafuri et al, 2002).

    Microarray:

    Article Title: Genetic alterations determine chemotherapy resistance in childhood T-ALL: modelling in stage-specific cell lines and correlation with diagnostic patient samples.
    Article Snippet: Treatment failure in T-cell acute lymphoblastic leukaemia (T-ALL) occurs when leukaemic blasts acquire resistance to chemotherapeutic agents (Pui et al, 2002).. T-ALL is a biologically and clinically distinct disease entity that is associated with clinically aggressive features and poor treatment outcomes (Uckun et al, 1998; Pui & Evans, 2006).. Although 95% of children and young adults currently treated for T-ALL enter into a first remission, approximately 25% of patients relapse for reasons that remain unclear (Kanerva et al, 2001; Tafuri et al, 2002).

    Article Title: Puromycin-sensitive aminopeptidase (PSA/NPEPPS) impedes development of neuropathology in hPSA/TAU(P301L) double-transgenic mice.
    Article Snippet: The concentration and quality of RNA were determined using the Nanodrop spectrophotometer and confirmed on the Agilent Bioanalyzer. .. Agilent Whole Mouse Genome Microarray comparisons of the cerebellum and cortex were performed between hPSA transgenic and corresponding non-transgenic (control) littermate animals, producing two independent comparison groups—cerebellum and cortex. ..

    Article Title: High-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2.
    Article Snippet: Pseudomonas putida mt-2 metabolizes m-xylene and other aromatic compounds through the enzymes encoded by the xyl operons of the TOL plasmid pWW0 along with other chromosomally encoded activities.. Tiling arrays of densely overlapping oligonucleotides were designed to cover every gene involved in this process, allowing dissection of operon structures and exposing the interplay of plasmid and chromosomal functions.. All xyl sequences were transcribed in response to aromatic substrates and the 3′-termini of both upper and lower mRNA operons extended beyond their coding regions, i.e. the 3′-end of the lower operon mRNA penetrated into the convergent xylS regulatory gene.

    Article Title: Sex-dependent gene regulatory networks of the heart rhythm
    Article Snippet: .. Supplementary Table 1 presents such comparisons with data obtained through Agilent cDNA microarray ( Isensee et al. 2008 ) and Affymetrix ( Witt et al. 2008 ). ..

    Article Title: Deciphering potential vascularization factors of on-chip co-cultured hiPSC-derived cerebral organoids.
    Article Snippet: The dye incorporation efficiency was detected using a NanoDrop One/One spectrophotometer (Thermo Fisher Scientific). .. Agilent whole human genome microarray comparisons of CO outer layers were performed for co-cultured organoids prior to detecting the vascular bed angiogenic response (d28, control), during visible angiogenic response (d31), and inhibited angiogenesis (d35), producing two independent comparison groups: d31 (angiogenesis) versus d28 (control) and d35 (inhibited angiogenesis) versus d28 (control) (Fig. 1). ..

    Transgenic Assay:

    Article Title: Puromycin-sensitive aminopeptidase (PSA/NPEPPS) impedes development of neuropathology in hPSA/TAU(P301L) double-transgenic mice.
    Article Snippet: The concentration and quality of RNA were determined using the Nanodrop spectrophotometer and confirmed on the Agilent Bioanalyzer. .. Agilent Whole Mouse Genome Microarray comparisons of the cerebellum and cortex were performed between hPSA transgenic and corresponding non-transgenic (control) littermate animals, producing two independent comparison groups—cerebellum and cortex. ..

    Control:

    Article Title: Puromycin-sensitive aminopeptidase (PSA/NPEPPS) impedes development of neuropathology in hPSA/TAU(P301L) double-transgenic mice.
    Article Snippet: The concentration and quality of RNA were determined using the Nanodrop spectrophotometer and confirmed on the Agilent Bioanalyzer. .. Agilent Whole Mouse Genome Microarray comparisons of the cerebellum and cortex were performed between hPSA transgenic and corresponding non-transgenic (control) littermate animals, producing two independent comparison groups—cerebellum and cortex. ..

    Article Title: Deciphering potential vascularization factors of on-chip co-cultured hiPSC-derived cerebral organoids.
    Article Snippet: The dye incorporation efficiency was detected using a NanoDrop One/One spectrophotometer (Thermo Fisher Scientific). .. Agilent whole human genome microarray comparisons of CO outer layers were performed for co-cultured organoids prior to detecting the vascular bed angiogenic response (d28, control), during visible angiogenic response (d31), and inhibited angiogenesis (d35), producing two independent comparison groups: d31 (angiogenesis) versus d28 (control) and d35 (inhibited angiogenesis) versus d28 (control) (Fig. 1). ..

    Comparison:

    Article Title: Puromycin-sensitive aminopeptidase (PSA/NPEPPS) impedes development of neuropathology in hPSA/TAU(P301L) double-transgenic mice.
    Article Snippet: The concentration and quality of RNA were determined using the Nanodrop spectrophotometer and confirmed on the Agilent Bioanalyzer. .. Agilent Whole Mouse Genome Microarray comparisons of the cerebellum and cortex were performed between hPSA transgenic and corresponding non-transgenic (control) littermate animals, producing two independent comparison groups—cerebellum and cortex. ..

    Article Title: Deciphering potential vascularization factors of on-chip co-cultured hiPSC-derived cerebral organoids.
    Article Snippet: The dye incorporation efficiency was detected using a NanoDrop One/One spectrophotometer (Thermo Fisher Scientific). .. Agilent whole human genome microarray comparisons of CO outer layers were performed for co-cultured organoids prior to detecting the vascular bed angiogenic response (d28, control), during visible angiogenic response (d31), and inhibited angiogenesis (d35), producing two independent comparison groups: d31 (angiogenesis) versus d28 (control) and d35 (inhibited angiogenesis) versus d28 (control) (Fig. 1). ..

    Extraction:

    Article Title: High-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2.
    Article Snippet: Pseudomonas putida mt-2 metabolizes m-xylene and other aromatic compounds through the enzymes encoded by the xyl operons of the TOL plasmid pWW0 along with other chromosomally encoded activities.. Tiling arrays of densely overlapping oligonucleotides were designed to cover every gene involved in this process, allowing dissection of operon structures and exposing the interplay of plasmid and chromosomal functions.. All xyl sequences were transcribed in response to aromatic substrates and the 3′-termini of both upper and lower mRNA operons extended beyond their coding regions, i.e. the 3′-end of the lower operon mRNA penetrated into the convergent xylS regulatory gene.

    Software:

    Article Title: High-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2.
    Article Snippet: Pseudomonas putida mt-2 metabolizes m-xylene and other aromatic compounds through the enzymes encoded by the xyl operons of the TOL plasmid pWW0 along with other chromosomally encoded activities.. Tiling arrays of densely overlapping oligonucleotides were designed to cover every gene involved in this process, allowing dissection of operon structures and exposing the interplay of plasmid and chromosomal functions.. All xyl sequences were transcribed in response to aromatic substrates and the 3′-termini of both upper and lower mRNA operons extended beyond their coding regions, i.e. the 3′-end of the lower operon mRNA penetrated into the convergent xylS regulatory gene.

    other:

    Article Title: Functional genomics and biochemical characterization of the C. elegans orthologue of the Machado-Joseph disease protein ataxin-3.
    Article Snippet: Machado-Joseph disease (MJD) is the most common dominant spinocerebellar ataxia.. MJD is caused by a CAG trinucleotide expansion in the ATXN3 gene, which encodes a protein named ataxin-3.. Ataxin-3 has been proposed to act as a deubiquitinating enzyme in the ubiquitin-proteasome pathway and to be involved in transcriptional repression; nevertheless, its precise biological function(s) remains unknown.



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    Image Search Results


    Confirmation of cDNA-Array data by quantitative RT-PCT

    Journal: BMC Cancer

    Article Title: Metastatic canine mammary carcinomas can be identified by a gene expression profile that partly overlaps with human breast cancer profiles

    doi: 10.1186/1471-2407-10-618

    Figure Lengend Snippet: Confirmation of cDNA-Array data by quantitative RT-PCT

    Article Snippet: To supplement the gene annotations of the differentially expressed genes with functional information, BLAST search and Affymetrix-provided human to canine microarray comparisons were used to map canine genes to their human equivalents as has been shown before [ ].

    Techniques: Microarray

    Figure 1. Study design. Carotid plaques (n=34) from asymptomatic and symptomatic patients were sectioned at 2 levels and 3 cores drilled from each level (A) to construct 2 tissue microarray (TMA) blocks with 204 cores in total (B). Based on symptomatic vs asymptom- atic microarray comparisons generated for n=127 plaques (C), highly upregulated genes were chosen for the study (D; in red). Several genes already known to be associated with atherosclerosis were also included (D; in black). TMAs were stained by immunohistochemistry (IHC) with antibodies toward human proteins of interest, and tissue sections were scored (0, 1, 2, or 3) for semiquantitative grading of staining intensity (E). Significantly differentially expressed proteins were validated further by IHC on individual plaques (F).

    Journal: Arteriosclerosis, Thrombosis, and Vascular Biology

    Article Title: Profiling of Atherosclerotic Lesions by Gene and Tissue Microarrays Reveals PCSK6 as a Novel Protease in Unstable Carotid Atherosclerosis

    doi: 10.1161/atvbaha.113.301743

    Figure Lengend Snippet: Figure 1. Study design. Carotid plaques (n=34) from asymptomatic and symptomatic patients were sectioned at 2 levels and 3 cores drilled from each level (A) to construct 2 tissue microarray (TMA) blocks with 204 cores in total (B). Based on symptomatic vs asymptom- atic microarray comparisons generated for n=127 plaques (C), highly upregulated genes were chosen for the study (D; in red). Several genes already known to be associated with atherosclerosis were also included (D; in black). TMAs were stained by immunohistochemistry (IHC) with antibodies toward human proteins of interest, and tissue sections were scored (0, 1, 2, or 3) for semiquantitative grading of staining intensity (E). Significantly differentially expressed proteins were validated further by IHC on individual plaques (F).

    Article Snippet: From the list of highly upregulated genes obtained by microarray comparisons between symptomatic and asymptomatic carotid lesions, candidates with relatively restricted tissue distribution in humans were chosen for further analysis (based on the Human Protein Atlas).

    Techniques: Construct, Microarray, Generated, Staining, Immunohistochemistry

    Figure 4. PCSK6 is the most significantly upregulated proprotein convertase (PC) in symptomatic carotid plaques. Analy- ses of n=127 microarray profiles between carotid plaques (CP) and normal controls (iliac arteries [IA]) show significant down- regulation of Furin and PCSK5 in plaque tissue, upregulation of PCSK6 and PCSK7, whereas PCSK9 and PCSK2 did not exhibit significant variation in expression (A). Posi- tive correlation was found between expres- sion of PCSK6 and PCSK9, PCSK2 and PCSK7, whereas negative was observed with PCSK5 (B). Several PCSK6 isoforms recognized by different Affymetrix probes were significantly upregulated in plaques compared with controls, but most highly the isoform coding for secreted protein (C). This isoform was the only one with signifi- cantly higher expression in comparison between symptomatic (s) and asymptom- atic (as) plaques (D). Results were con- firmed by quantitative real-time polymerase chain reaction (qRT-PCR) analyses for expression of secreted PCSK6 isoform in a separate cohort of n=233 carotid plaques (E and F). Micorarray data expressed as log2 value and qRT-PCR data as fold change compared with control. Data in A, C, and D show mean with SD, whereas median with interquartile range is depicted in E and F. ER indicates endoplasmatic reticulum.

    Journal: Arteriosclerosis, Thrombosis, and Vascular Biology

    Article Title: Profiling of Atherosclerotic Lesions by Gene and Tissue Microarrays Reveals PCSK6 as a Novel Protease in Unstable Carotid Atherosclerosis

    doi: 10.1161/atvbaha.113.301743

    Figure Lengend Snippet: Figure 4. PCSK6 is the most significantly upregulated proprotein convertase (PC) in symptomatic carotid plaques. Analy- ses of n=127 microarray profiles between carotid plaques (CP) and normal controls (iliac arteries [IA]) show significant down- regulation of Furin and PCSK5 in plaque tissue, upregulation of PCSK6 and PCSK7, whereas PCSK9 and PCSK2 did not exhibit significant variation in expression (A). Posi- tive correlation was found between expres- sion of PCSK6 and PCSK9, PCSK2 and PCSK7, whereas negative was observed with PCSK5 (B). Several PCSK6 isoforms recognized by different Affymetrix probes were significantly upregulated in plaques compared with controls, but most highly the isoform coding for secreted protein (C). This isoform was the only one with signifi- cantly higher expression in comparison between symptomatic (s) and asymptom- atic (as) plaques (D). Results were con- firmed by quantitative real-time polymerase chain reaction (qRT-PCR) analyses for expression of secreted PCSK6 isoform in a separate cohort of n=233 carotid plaques (E and F). Micorarray data expressed as log2 value and qRT-PCR data as fold change compared with control. Data in A, C, and D show mean with SD, whereas median with interquartile range is depicted in E and F. ER indicates endoplasmatic reticulum.

    Article Snippet: From the list of highly upregulated genes obtained by microarray comparisons between symptomatic and asymptomatic carotid lesions, candidates with relatively restricted tissue distribution in humans were chosen for further analysis (based on the Human Protein Atlas).

    Techniques: Microarray, Expressing, Comparison, Real-time Polymerase Chain Reaction, Quantitative RT-PCR, Control